FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003470908

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003470908
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1711778
Sequences flagged as poor quality0
Sequence length25-355
%GC44

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATCTTACCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGT138390.8084576387825991No Hit
GGCAGGTCAATTTCACTGGTTAAAAGTAAGAGACAGCTGAACCCTCGTGG136240.7958975988708816No Hit
AAATCTTACCCCGCCTGTTTACCAAAACATCACCTCTAGCATCACCAGTA20620.12045954557191411No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)