FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003471026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2292240
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55500.24212124384881162No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC35610.1553502251073186No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33410.1457526262520504No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25170.10980525599413674No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)