FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2539738
Sequences flagged as poor quality0
Sequence length94
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC70350.27699707607635116No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55290.21769962098452675No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG42920.1689938095976829No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39150.1541497587546432No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA33160.13056464879448196No Hit
GTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTG32080.12631224165642282No Hit
ATGCTGGAGTGGGCTTTTTGTGTGCAAGAAAACAGTTATGTCTTCCCTCT31060.12229607935936698No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29360.11560247553094061No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC29130.11469687030709466No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA28570.11249191845773068No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA26140.10292400239709765No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT25940.10213651959375337No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)