FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003471037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4474778
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT126000.2815782146064006No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC114540.255968005563628No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT66310.14818612230595574No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT61310.13701238363109858No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG55470.12396145685886541No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA50420.11267598079725966No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)