FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003471070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2124
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.2824858757062147No Hit
GTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGA50.23540489642184556No Hit
GAATAGTAATGAGGATGTAAGCCCGTGGGCGATTATGAGAATGACTGCGC50.23540489642184556No Hit
CTACAGGAGGAAACGCGAGCGTGGTGGGACTGGCTCCAGGCACACAGGCG40.18832391713747645No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.18832391713747645No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC30.14124293785310735No Hit
ATATTATGCTTGGTTATAATTTTTCATCTTTCCCTTGCGGTACTATATCT30.14124293785310735No Hit
TGGTGGGACTGGCTCCAGGCACACAGGCGAAGGGCAAGAGGGTTGGACAC30.14124293785310735No Hit
CGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTACGCCGGCAGGCGC30.14124293785310735No Hit
GGACACTTCACTGGGTGGCAGGCTGTGTTCCAAGTTCCACGAAATAGCTC30.14124293785310735No Hit
GGCGATTTCCCCCATGTCTGGTTTGTCTGCCATTTTCTTAAAACAATCCG30.14124293785310735No Hit
ATTGAGTATAGTAGTTCGCTTTGACTGGTGAAGTCTTAGCATGTACTGCT30.14124293785310735No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30.14124293785310735No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)