FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3108889
Sequences flagged as poor quality0
Sequence length94
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC122170.39296996451143806No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72020.23165831909727239No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG60340.19408862780240788No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA53140.17092922905899824No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44850.14426375467248911No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA44340.14262329726149758No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC44290.14246246810355725No Hit
GTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTG43960.14140099566115097No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36810.1184024260756817No Hit
GGTCTGGACACTTCACTGGGTGGCAGGCTGTGTTCCAAGTTCCACGAAAT34910.11229091807394859No Hit
GGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAGCAAC31720.10203001779735461No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA31680.10190135447100235No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)