FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003471084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3170
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT90.28391167192429023No Hit
CTACAGGAGGAAACGCGAGCGTGGTGGGACTGGCTCCAGGCACACAGGCG70.22082018927444794No Hit
GTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGA50.15772870662460567No Hit
GGCTCCAGGCACACAGGCGAAGGGCAAGAGGGTTGGACACGAAGCCACAA50.15772870662460567No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50.15772870662460567No Hit
CCCATAGTAGGCCTAAAAGCAGCCACCAATTAAGAAAGCGTTCAAGCTCA40.12618296529968456No Hit
CACCGAGGACCCTGCCAAGTTCAAGATGAAGTACTGGGGCGTAGCCTCCT40.12618296529968456No Hit
GTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTT40.12618296529968456No Hit
ACATGAAGCTGCTCGCAGCAACTGTGCTACTCCTCACCATCTGCAGCCTT40.12618296529968456No Hit
GAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTATTTCCA40.12618296529968456No Hit
TGGTGGGACTGGCTCCAGGCACACAGGCGAAGGGCAAGAGGGTTGGACAC40.12618296529968456No Hit
TGCTAGAAGTCATCAAAAAGCTATTAGTGGGAGTAGAGTTTGAAGTCCTT40.12618296529968456No Hit
GAATAGTAATGAGGATGTAAGCCCGTGGGCGATTATGAGAATGACTGCGC40.12618296529968456No Hit
CTTGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTT40.12618296529968456No Hit
ATTGAAGAGTATGCAATGAGCGATTTTAGGTCTGTTTGTCGTATGCCGTC40.12618296529968456No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.12618296529968456No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)