FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003471088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3890
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT140.35989717223650386No Hit
CGTTTATTCTGAGCACCGGGAAGGGGGGCGGCGGCGGGCGCCTCACTGGG70.17994858611825193No Hit
TGGTGGGACTGGCTCCAGGCACACAGGCGAAGGGCAAGAGGGTTGGACAC60.15424164524421594No Hit
ATTGAGTATAGTAGTTCGCTTTGACTGGTGAAGTCTTAGCATGTACTGCT60.15424164524421594No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.15424164524421594No Hit
CCTTTAATAGCGGCTGCACCATCGGGATGTCCTGATCCAACATCGAGGTC60.15424164524421594No Hit
GTATAGTAGTTCGCTTTGACTGGTGAAGTCTTAGCATGTACTGCTCGTAT50.12853470437017994No Hit
GAATAGTAATGAGGATGTAAGCCCGTGGGCGATTATGAGAATGACTGCGC50.12853470437017994No Hit
GCACACAGGCGAAGGGCAAGAGGGTTGGACACGAAGCCACAAAGCTACTT50.12853470437017994No Hit
CCCTATTGTTGATATGGACTCTAGAATAGGATTGCGCTGTTATCCCTAGG50.12853470437017994No Hit
GTTATCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGA50.12853470437017994No Hit
ACAGGAGGAAACGCGAGCGTGGTGGGACTGGCTCCAGGCACACAGGCGAA50.12853470437017994No Hit
CTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGTCA50.12853470437017994No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC50.12853470437017994No Hit
GAGAATGACTGCGCCGGTGAAGCTTCAGGGGGTTTGGATGAGAATGGCTG50.12853470437017994No Hit
GTATAGGGCTGTGACTAGTATGTTGAGTCCTGTAAGTAGGAGAGTGATAT40.10282776349614395No Hit
CTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGT40.10282776349614395No Hit
ATTCTGAGCACCGGGAAGGGGGGCGGCGGCGGGCGCCTCACTGGGTGTTG40.10282776349614395No Hit
CTCCAGCATCGATCCCACTTTTCCAAGTTCCAGAACCTGTCACAAGCTGT40.10282776349614395No Hit
GGGGTAGGAAATCCTCCAGGATCTTAGGAAATTTCACTCCGCTTCTCCTG40.10282776349614395No Hit
CTACAGGAGGAAACGCGAGCGTGGTGGGACTGGCTCCAGGCACACAGGCG40.10282776349614395No Hit
GATATGGACTCTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTT40.10282776349614395No Hit
CCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTATA40.10282776349614395No Hit
TCCCTAGGGTAACTTGTTCCGTTGGTCAAGTTATTGGATCAATTGAGTAT40.10282776349614395No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)