FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3061825
Sequences flagged as poor quality0
Sequence length94
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC120360.39309888710164687No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG61060.19942354641431173No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA51220.16728585075894278No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT45590.14889812448458029No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA44820.14638328447902801No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC41920.13691180913344164No Hit
GTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTG39950.13047773795040538No Hit
GGTCTGGACACTTCACTGGGTGGCAGGCTGTGTTCCAAGTTCCACGAAAT36140.11803417896189364No Hit
GGCTAGGCCGCCCTCCCCACTGTTACCAACATGAAGCTGCTCGCAGCAAC34760.11352706310778701No Hit
ACATGAAGCTGCTCGCAGCAACTGTGCTACTCCTCACCATCTGCAGCCTT31300.10222661321270812No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)