FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1816869
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33410.18388777616878269No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26910.14811194422933077No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23150.12741700144589402No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG22310.12279366316448792No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA19440.10699725736968378No Hit
GTCTGGAGAGCTGCATGGGCTCACAACTGAGGAGGAATTTGTAGAAGGGA19090.10507086641909791No Hit
CAATGTGGCCGTGCATGTGTTCAGAAAGGCTGCTGATGACACCTGGGAGC18440.10149328322515273No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)