FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471096

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471096
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1147794
Sequences flagged as poor quality0
Sequence length94
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTT26870.23410124116348402No Hit
GTCCCAGTTGTCAAGGAGCTTTAGGTTTAGCTGTTTTCCCAAGGCGGAGC23030.20064576047618302No Hit
CTCTTGGAGCTCTGCGCGCAGCGGCTCCACCTTCTGGCGGTAGAGCTCCA19090.16631904331265018No Hit
CTTATACACATCTCCGAGCCCACGAGACAAGAGGCAATCTCGTATGCCGT17530.15272775428343413No Hit
TCTTAGTGTACTCCTCGAGAGCGCTCAGGAAGCTGACCTTGAAGCTCTCC17000.1481102009594056No Hit
GTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTTTG16470.14349264763537709No Hit
GTGCTGACCTTGGCCGTGCTCTTCCTGACGGGGAGCCAGGCTCGGCATTT16050.13983345443520354No Hit
CATCTGGCCCCCTACAGCGACGAGCTGCGCCAGCGCTTGGCCGCGCGCCT14950.13024985319665375No Hit
CTCCAGCACGGGCAGCAGGCCTTGGCGGAGGTCCTCGAGCGCGGGCTTGG14280.12441256880590071No Hit
CACGTACACAGTGGCCAGGTCCTTCACTCGATCCCAGGGGCTCTGGGGGG14140.12319283773917619No Hit
GTACTCGGCCAGTCTGGCGCCGCCGTTCTCCTTGAGAGCCTCAAGGCGCG14090.12275721950106028No Hit
TCCACGTACACAGTGGCCAGGTCCTTCACTCGATCCCAGGGGCTCTGGGG13340.11622294592932181No Hit
CAACTGGGACAGCGTGACCTCCACCTTCAGCAAGCTGCGCGAACAGCTCG12480.10873031223372835No Hit
TCCCAGAACTCCTGGGTCACAGGGCCGAGCTGTTCGCGCAGCTTGCTGAA11710.1020217913667435No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)