FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471097

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471097
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2692309
Sequences flagged as poor quality0
Sequence length94
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC91160.33859412125428395No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG43490.16153420725481363No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA38260.1421085024044417No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA34060.12650850998158086No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC33350.12387136840533534No Hit
GTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTG31920.11855994241374225No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA30800.11439994443431271No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29080.10801137610876017No Hit
TTCCATGAGCATGCAGAGGTGGTATTCACAGCCAACGACTCCGGCCCCCG27780.10318280702549373No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)