FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2548124
Sequences flagged as poor quality0
Sequence length94
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT69140.27133687371572185No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC51220.20101062585651247No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42920.16843764275207956No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA38650.15168021650437735No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36520.1433211256595048No Hit
TTCCATGAGCATGCAGAGGTGGTATTCACAGCCAACGACTCCGGCCCCCG31340.12299244463770209No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG26610.10442976872397104No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC26080.10234980715224219No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)