FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003471102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences648857
Sequences flagged as poor quality0
Sequence length94
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15650.2411933600161515No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC10020.1544253972755168No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT9330.1437913130319932No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC9180.1414795555877489No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA8640.13315722878846958No Hit
TTCCATGAGCATGCAGAGGTGGTATTCACAGCCAACGACTCCGGCCCCCG7480.11527963788631394No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA7310.11265964611617044No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG7080.10911495136832923No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6730.10372085066509262No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)