FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003471105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4566395
Sequences flagged as poor quality0
Sequence length94
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC107430.23526217070577557No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG56990.12480304485266824No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53600.11737924555365886No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA51630.11306512029730237No Hit
CTCCACACATGGCTCCTTTGCCTGTCTCCGAACCAAAGCTCCTTCAAGGC50030.10956126222107374No Hit
GTCTGGAAGTACTGAGAAACCAGGCTCTCCACACATGGCTCCTTTGCCTG46390.10158998509765362No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)