FastQCFastQC Report
Fri 9 Sep 2022
EGAF00003471112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2324981
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT85450.36752988519045965No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48470.2084748219447815No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46360.199399478963484No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA30260.13015160123889183No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT29460.1267107129047506No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC29410.1264956573838668No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA26700.11483964815196339No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC26570.11428050379766544No Hit
ATGCTGGAGTGGGCTTTTTGTGTGCAAGAAAACAGTTATGTCTTCCCTCT24620.10589333848319621No Hit
TTCCATGAGCATGCAGAGGTGGTATTCACAGCCAACGACTCCGGCCCCCG24590.10576430517066591No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC24060.10348471664929734No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG23800.10236642794070146No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)