FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1860213
Sequences flagged as poor quality0
Sequence length89
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72520.3898478292539618No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC61270.32937088387190067No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40100.21556671198405775No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39690.2133626633079115No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG25490.1370273189145544No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA24180.1299851146078433No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT22330.12004001692279326No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA21300.11450301659003566No Hit
GGTCTGGACACTTCACTGGGTGGCAGGCTGTGTTCCAAGTTCCACGAAAT18670.10036485069182938No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)