FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1369835
Sequences flagged as poor quality0
Sequence length89
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46920.342523004595444No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26050.1901688889537791No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25220.18410976504469517No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA22840.16673540973912918No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA21070.15381414549927547No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC20400.14892304547628No Hit
TTCCATGAGCATGCAGAGGTGGTATTCACAGCCAACGACTCCGGCCCCCG20150.14709800815426677No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT19560.1427909200743155No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG18710.13658579317947053No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC17840.13023466329886446No Hit
GTTCTAGATGCTGTCCGAGGCAGTCCTGCCATCAATGTGGCCGTGCATGT17160.12527056178298848No Hit
CAATGTGGCCGTGCATGTGTTCAGAAAGGCTGCTGATGACACCTGGGAGC15870.11585336920140017No Hit
ATGCTGGAGTGGGCTTTTTGTGTGCAAGAAAACAGTTATGTCTTCCCTCT15730.11483134830107275No Hit
GTGTAGCGGCGGGGGCCGGAGTCGTTGGCTGTGAATACCACCTCTGCATG15510.1132253154577011No Hit
CTTCTAACATAGCATATGAGGTGAAAACACTGCTTTAGTAAAAATGGAAT15360.11213029306449318No Hit
GTCTGGAGAGCTGCATGGGCTCACAACTGAGGAGGAATTTGTAGAAGGGA14540.10614417064828975No Hit
GTCCGAGGCAGTCCTGCCATCAATGTGGCCGTGCATGTGTTCAGAAAGGC14020.10234809301850223No Hit
GCATATGAGGTGAAAACACTGCTTTAGTAAAAATGGAATACTCTTGGTTA14000.10220209003274118No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)