FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1419393
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC48160.3392999683667596No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37870.26680419024188506No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21710.15295270583974982No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT19700.13879172294072184No Hit
TGTGTGGAGAGCCTGGTTTCTCAGTACTTCCAGACCGTGACTGACTATGG18380.1294919729771811No Hit
CTTCCAGACCGTGACTGACTATGGCAAGGACCTGATGGAGAAGGTCAAGA17860.12582843511275593No Hit
GTGCTACTCCTCACCATCTGCAGCCTTGAAGGAGCTTTGGTTCGGAGACA15650.11025839918894907No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)