FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471138

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471138
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3161580
Sequences flagged as poor quality0
Sequence length89
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT76360.24152480721664482No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44900.14201759879553894No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38290.12111033091049411No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC36020.11393037658385997No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA35490.11225399958248723No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA32040.10134173419619305No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)