FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3040654
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT101000.3321653828419807No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53740.17673829380126777No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT51180.16831905241438191No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT50640.16654311868433566No Hit
ATGCTGGAGTGGGCTTTTTGTGTGCAAGAAAACAGTTATGTCTTCCCTCT41380.13608914398020952No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC39270.1291498473683622No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA38210.12566375523160478No Hit
CTCCAGCATCGATCCCACTTTTCCAAGTTCCAGAACCTGTCACAAGCTGT34410.1131664437979461No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC32850.10803596857781254No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC32480.10681912509611419No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC31540.10372768489936704No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA31480.10353035892936191No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)