FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471190

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471190
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1417574
Sequences flagged as poor quality0
Sequence length89
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36410.2568472615891657No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36020.25409608246200904No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34280.2418215909716177No Hit
CTTATACACATCTCCGAGCCCACGAGACCGAGGCTGATCTCGTATGCCGT20000.14108610908495783No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT18580.13106899533992583No Hit
ATGCTGGAGTGGGCTTTTTGTGTGCAAGAAAACAGTTATGTCTTCCCTCT16530.11660766915871765No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG15240.10750761512273786No Hit
GTCTGGAGAGCTGCATGGGCTCACAACTGAGGAGGAATTTGTAGAAGGGA14780.10426263461378382No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)