FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1861664
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79850.42891735565601524No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT45890.246499905460921No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39890.21427067397768876No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC30590.16431536517867887No Hit
CTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTATGCCGT23760.12762775667359952No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT21520.11559551025319284No Hit
GTATATCCCTTCTACAAATTCCTCCTCAGTTGTGAGCCCATGCAGCTCTC21300.11441377176547433No Hit
CTCATGGAATGGGGAGATGCCAAGTGCCTTCCAGTAAGATTTGGTGTCTA18950.10179065610120838No Hit
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG18750.10071634838510066No Hit
GTTTTATTGTCTCTGCCTGGACTTCTAACATAGCATATGAGGTGAAAACA18640.1001254791412414No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)