FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3729281
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC125370.3361774025609762No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT115790.3104888046784353No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT64860.17392092470371634No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56510.15153054972258725No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG53710.14402240002831646No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC50160.1345031388087945No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC46480.1246352849248957No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA42530.11404343089190651No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC41070.11012846712275101No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT40320.10811735559749988No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT37760.10125276159130943No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA37380.10023379841851553No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)