FastQCFastQC Report
Sat 3 Sep 2022
EGAF00003471226

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471226
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences762229
Sequences flagged as poor quality0
Sequence length89
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92591.214726807822846No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52580.6898189389278025No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT46380.6084785543452165No Hit
GTATCAACGCAGAGTACATGGGCGACTACGGAGCCTGGATATCGAGGCCC21420.28101790931596676No Hit
GTACATGGGCGACTACGGAGCCTGGATATCGAGGCCCCTTGTGCAAAAAA21290.2793123851231061No Hit
TATCAACGCAGAGTACATGGGCGACTACGGAGCCTGGATATCGAGGCCCC18150.23811741615708662No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT16570.21738873750539534No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA13810.1811791469492764No Hit
ACGCAGAGTACATGGGCGACTACGGAGCCTGGATATCGAGGCCCCTTGTG11700.15349717735746082No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA11300.1482494106101972No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC11270.14785582810415243No Hit
GGTATCAACGCAGAGTACATGGGCGACTACGGAGCCTGGATATCGAGGCC10600.13906581880248586No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA10390.13631074126017245No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC10360.1359171587541277No Hit
GCACAAGGGGCCTCGATATCCAGGCTCCGTAGTCGCCCATGTACTCTGCG10270.1347364112359934No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA10200.13381805205522224No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTC10030.13158775118763522No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA9980.13093178034422726No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT9970.13080058617554566No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA9940.13040700366950092No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC9820.1288326736453218No Hit
GTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGAT9560.12542162525960046No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT9560.12542162525960046No Hit
GTACATGGGCGACTACGGAGCCTGGATATCGAGGCCCCTTGTGCAAATCC9190.1205674410183816No Hit
GGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATG8950.11741878097002345No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG8760.11492609176507323No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG8630.11322056757221255No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT7660.10049473321009827No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)