FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471228

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471228
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1800721
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT76270.4235525658888856No Hit
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC48950.27183555920100894No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT43150.2396262386010937No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39530.21952317988183623No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG23630.1312252147889651No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC22560.12528315047139452No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC18790.1043470920814496No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)