FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471230

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471230
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2229798
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79550.35675877366469966No Hit
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC64490.2892190234272342No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44310.19871755199349894No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT35710.16014903592163954No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG33020.14808516287125562No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC25100.11256625039577577No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT24900.11166930816154648No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA23180.10395560494717458No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT22870.10256534448411919No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)