FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471270

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471270
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3871805
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC133670.3452394942410581No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT127400.32904549686774No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG79240.20465906728257235No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74050.19125446658599798No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC60080.1551731040173769No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58360.15073073153219235No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA57720.1490777557237516No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC52840.13647381518439072No Hit
CTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATC52650.1359830879912599No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT51540.13311620807349545No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT50150.12952615123953815No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA48610.12554867820047755No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC48310.12477384579027094No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC46850.12100299472726544No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC41760.10785667150075998No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG40330.10416330367877513No Hit
CCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCAC39500.10201960067720353No Hit
GGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTG39220.10129642376101068No Hit
TTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCC38750.10008251965168699No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)