FastQCFastQC Report
Sat 10 Sep 2022
EGAF00003471274

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471274
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2450154
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT79810.32573462729281505No Hit
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC59320.24210723081079805No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT49440.20178323484972782No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG36370.1484396490996076No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32650.133256929972565No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC31050.1267267281974929No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC29810.12166582182181203No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT25180.10276905043519714No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA24520.1000753422029799No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)