FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471294

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471294
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3688629
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC157410.426743920302096No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT128540.3484763580181146No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG75870.2056861777099296No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74800.20278537093321122No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC64220.17410262729051906No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT61550.16686416552057687No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC59320.16081855887377125No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT59190.16046612440557181No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA58290.15802619347188346No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC53780.14579942845973395No Hit
CTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATC52310.1418142079347096No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT51750.1402960286870813No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC50570.13709700812957876No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA50090.13579571163161164No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT47320.128286146424593No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG45960.12459913968035279No Hit
GGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTG42870.11622204347468937No Hit
GTACATGGGAGGGACCCGCAGCTCAGCTACAGCACAGATCAGCACCATGA42100.11413454700920043No Hit
CCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCAC38400.10410371983737048No Hit
GAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGT38110.10331751986984866No Hit
TTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCC38080.1032361888387257No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)