FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471350

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471350
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1837553
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC74290.40428765864168276No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57860.31487527162481843No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38170.20772189972207605No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG36700.19972213046371995No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT35640.19395358936585774No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG33810.18399469294218998No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA30160.16413132029389085No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC30100.16380479909967222No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT28900.1572743752152999No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA26130.14219998008220716No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC25340.13790078435832873No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT24910.13556071579976198No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC24120.13126152007588351No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT23960.13039079689130056No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC23760.12930239291057183No Hit
GGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTG23220.12636370216260429No Hit
CTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATC22860.1244045749972926No Hit
GTACATGGGGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTT21980.11961559748208622No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC21810.11869045409846682No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT21480.11689458753026444No Hit
CTCCTGCCCCATTCATTGGCAGCCTGATCAGCCAGCGAGTCCTCCGCACC21470.116840167331228No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG21410.11651364613700937No Hit
CCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCAC19150.10421468115477486No Hit
GTACATGGGAGGGACCCGCAGCTCAGCTACAGCACAGATCAGCACCATGA18740.10198345299428098No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)