FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003471370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25462
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC1120.43987118058282937No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1010.39666954677558713No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT870.3416856492027335No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT820.3220485429267143No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG460.18066137773937632No Hit
CCTTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAG410.16102427146335715No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC400.15709685020815334No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT400.15709685020815334No Hit
GACATGAGAGAAGCCAATTACATCGGCTCAGACAAATACTTCCATGCTCG400.15709685020815334No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC380.14924200769774568No Hit
GTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAGGCTTT350.13745974393213417No Hit
GTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAGACA350.13745974393213417No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC340.13353232267693033No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT340.13353232267693033No Hit
ATCAAAAGCCTCGCCAAGGAACGAAAAGAAGCTTCGGCTGCTGACACCCA310.12175005891131882No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA300.117822637656115No Hit
GGGTGTCAGCAGCCGAAGCTTCTTTTCGTTCCTTGGCGAGGCTTTTGATG290.11389521640091116No Hit
GGCCTGGTTTTCTGCTCCTTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTT290.11389521640091116No Hit
CCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCCTGGGTGTC290.11389521640091116No Hit
GTACATGGGAGGGACCCGCAGCTCAGCTACAGCACAGATCAGCACCATGA280.10996779514570734No Hit
TCCCGAGCCCCATCAAAAGCCTCGCCAAGGAACGAAAAGAAGCTTCGGCT270.1060403738905035No Hit
GTATTTGTCTGAGCCGATGTAATTGGCTTCTCTCATGTCAGAGTAGGCTC270.1060403738905035No Hit
GCATCATAGTTCCCCCGAGCATGGAAGTATTTGTCTGAGCCGATGTAATT260.10211295263529965No Hit
ACTCTGACATGAGAGAAGCCAATTACATCGGCTCAGACAAATACTTCCAT260.10211295263529965No Hit
CTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGG260.10211295263529965No Hit
GGTTTTCTGCTCCTTGGTCCTGGGTGTCAGCAGCCGAAGCTTCTTTTCGT260.10211295263529965No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)