FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1693358
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT104670.6181209171362464No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT74180.4380644848874249No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT48400.2858226080958663No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18580.10972281112440486No Hit
TTTTTAGACAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGA17520.10346305979007392No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17260.10192764908542672No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)