FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2124944
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC113630.5347435038288069No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57560.2708777266600908No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT46000.21647629302231022No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC45450.2138879895187826No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42440.19972291034493142No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA38970.1833930682408572No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG36730.17285161397194468No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC35740.16819266766559496No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG34450.16212191944823018No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT33530.15779239358778396No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC32840.1545452491924493No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA32260.15181576549782017No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC30630.1441449751146383No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30390.14301553358582628No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT29630.13943896874458808No Hit
CTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATC29000.13647418473145645No Hit
GAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGT25790.12136790428359523No Hit
GACATGAGAGAAGCCAATTACATCGGCTCAGACAAATACTTCCATGCTCG24040.11313239313600736No Hit
GTACATGGGAGGGACCCGCAGCTCAGCTACAGCACAGATCAGCACCATGA23730.11167353116129178No Hit
ACTCTGACATGAGAGAAGCCAATTACATCGGCTCAGACAAATACTTCCAT23200.10917934778516517No Hit
CTCCTGCCCCATTCATTGGCAGCCTGATCAGCCAGCGAGTCCTCCGCACC23120.10880286727556114No Hit
GGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTG23040.10842638676595712No Hit
GTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAGACA22790.10724988517344457No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC21940.10324977975890187No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)