FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2692555
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC115360.42844064466649706No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT63610.2362440135856092No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44530.1653819513436123No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC44420.16497341744179786No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT43200.16044240507621943No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA41780.1551686037982511No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG38190.1418355428208523No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC37340.1386786899431952No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT36040.13385056201266082No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG35930.1334420281108464No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC33520.12449142171654805No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA33320.12374863280415814No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30780.11431521361680635No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT30500.11327530913946048No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC26990.10023936372701764No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)