FastQCFastQC Report
Mon 12 Sep 2022
EGAF00003471396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4256953
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC159720.3751979408746115No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT140400.32981336650886206No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT87650.20589844426283305No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT67390.1583057177281497No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT66730.1567553130137918No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG57890.13598928623360418No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC56250.13213676542823No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA53360.12534787205778405No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC48780.11458900297936106No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC48510.11395474650530556No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA46520.10928004138171128No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG45470.106813488427051No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT43690.10263209389438878No Hit
CTCTAGGACTGGCCAGTGGGTGTTCTAGAGGCCAGCTGGGGTTGGAAGAC43660.10256162095282706No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT42590.10004808603712562No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)