FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471444

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471444
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2314382
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC105120.4542033251209178No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53470.23103359773797064No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT46920.2027323060756608No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG44810.1936154014332984No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC37590.1624191684864469No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC36250.1566292859173637No Hit
CCTGAGAGCAGAGTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCA31500.13610544845232983No Hit
TTGTATCCCTGCCCTGAGGGCCTCACAGCCAGATCTCCTGAGAGCAGAGT31370.135543743426971No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC31090.13433391721850585No Hit
GTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGC31050.13416108490301082No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30220.1305748143564891No Hit
GTGAAGAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGA29940.12936498814802397No Hit
CTTAAGTATTTATTAGATACCCATTGTGTACCCTCTCCCCGCTTTGTATC29310.12664287917897737No Hit
GTACATGGGAGGGACCCGCAGCTCAGCTACAGCACAGATCAGCACCATGA28940.12504418026064842No Hit
CTCCTGCCCCATTCATTGGCAGCCTGATCGGCCAGCGAGTCCTCCGCACC28350.12249490360709683No Hit
GCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTT27840.1202912915845353No Hit
CATGTGGAGAGCCTACTCTGACATGAGAGAAGCCAATTACATCGGCTCAG27140.11726672606337243No Hit
GGGCAGGAGTGGCAAAGACCCCAATCACTTCCGACCTGCTGGCCTGCCTG24950.10780415679001998No Hit
CCCATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCAC23480.10145256919557792No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)