FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1779921
Sequences flagged as poor quality0
Sequence length89
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT71780.40327632518521894No Hit
GATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGCTCCTTGGTCC59890.3364756076252823No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41810.23489806570066873No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37500.21068350786355128No Hit
ATTATATGCCATATCTCAGCTTCTCTGGACATAGACCTCACTAACTTTGT26010.14613008105415914No Hit
GTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGCCAG22480.12629774018060352No Hit
CTACAGCACAGATCAGCACCATGAAGCTTCTCACGGGCCTGGTTTTCTGC22080.12405044943005897No Hit
ATTGTGTACCCTCTCCCCGCTTTGTATCCCTGCCCTGAGGGCCTCACAGC19130.10747668014479295No Hit
GACAAATACTTCCATGCTCGGGGGAACTATGATGCTGCCAAAAGGGGACC19070.10713958653221126No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)