FastQCFastQC Report
Sun 11 Sep 2022
EGAF00003471505

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471505
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2450709
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT112580.4593772659259014No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT58170.23735988238505673No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57140.2331570170101795No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)