FastQCFastQC Report
Wed 8 May 2024
EGAF00003471506

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471506
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2415525
Total Bases243.9 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT106360.440318357292928No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55880.2313368729365252No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT55220.22860454766562135No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)