FastQCFastQC Report
Wed 8 May 2024
EGAF00003471509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1455704
Total Bases147 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT57830.39726482856404877No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32440.2228475019646851No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT30410.20890235927084078No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)