FastQCFastQC Report
Sun 4 Sep 2022
EGAF00003471524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1549498
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80840.521717356201815No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT47340.3055183033472776No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT42790.27615395437748225No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)