FastQCFastQC Report
Fri 2 Sep 2022
EGAF00003471580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470591
Sequences flagged as poor quality0
Sequence length89
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18620.39567267542303186No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT15870.3372355187413274No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT14590.3100356785403886No Hit
CCGCTACACCATTGCCGCCCTGCTGAGCCCCTACTCCTATTCCACCACGG9920.21079876155727587No Hit
ATCCAGAACACTGCATAGAAATGAATATGGAATAGCTTCCATATTGGATT8970.19061138015814158No Hit
ATACACATCTCCGAGCCCACGAGACTCCTGAGCATCTCGTATGCCGTCTT6550.1391866822782416RNA PCR Primer, Index 26 (100% over 22bp)
GGGATATACAAAGTGGAAATAGACACCAAATCTTACTGGAAGGCACTTGG5740.12197428340108502No Hit
GTGTACGTGGATGTGCTCAAAGACAGCGGCAGAGACTATGTGTCCCAGTT5430.11538682210242016No Hit
GTACGGACATTCAGACTGCTGCAGCCAAAGTGAAGAGGGAAGACATAACT5050.10731186954276643No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4880.10369939076607924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)