FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003471688

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471688
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22957933
Sequences flagged as poor quality0
Sequence length51
%GC35

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA990010.43122784616541915No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA732750.31917071976819517No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG284630.12397893137853483No Hit
CAAACGAAAAACTAACCCCCCCACCTCCCTCCCGAGATCGGAAGAGCGTCG254430.11082443702575488No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG235180.1024395358240657No Hit
CAACCGCCCCTACTAAAAAATAAAAAACCCCTCTACCCGAGATCGGAAGAG232840.10142028030136685No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)