FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003471698

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471698
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24611467
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA1139530.46300775163057123No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA810160.329179890008182No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT663560.2696141599360981No Hit
CAAACGAAAAACTAACCCCCCCACCTCCCTCCCGAGATCGGAAGAGCGTCG518490.21067009130337497No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA512620.2082850242124941No Hit
CAAACAAAAAAACTCCTCACTTCCCAATAAAAACGACCGAGATCGGAAGAG509280.20692793322722292No Hit
CAACCGCCCCTACTAAAAAATAAAAAACCCCTCTACCCGAGATCGGAAGAG505020.20519703274900275No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA476610.1936536330808724No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA429130.17436181272737622No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAACA378280.15370071194862134No Hit
CAAAAAAAAAATAAAAAAATCAACCCCCCGCCCGAGATCGGAAGAGCGTCG378220.15367633306864642No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG335190.13619261297995766No Hit
CAAACGCGATAACTCACGCCTATAATCCCAACACTTTAAAAAACCGAAACG328980.13366939890255222No Hit
CAAACCCATAACACTTAAAAATAACTAAAATAAACTATATCCAACATCTAA305970.1243200984321658No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAACA303570.12334494323316851No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA285660.1160678475606513No Hit
CAACTCCAACATCTCACAATACTATCACATACACACCCCCCAAACAAAAAT253920.10317142005391226No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)