FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003471700

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471700
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24253248
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA1350480.5568243890467784No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA952270.3926360708470882No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT647960.2671642165206079No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA496920.20488802159611777No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAACA463330.1910383302063295No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA424530.17504047292964636No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA423800.17473948231593558No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAACA369990.1525527632422676No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA357970.14759672601376936No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG298100.12291137253039262No Hit
CAAACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT285730.11781102473367691No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCTAAATAACTAAAACTACAA255360.10528899057148963No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)