FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37147037
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATAG1675810.45112884777324236No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA1545310.4159981858041598No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAGG1262860.3399625116802721No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTTAAGTAGTTGGGATTATAG1073190.2889032576137903No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT1018230.2741079995155468No Hit
TGGAGGAGGAGATTTTATTTTATATTAATATTTATTTTGATTTTTTGGTTA906940.24414867866850323No Hit
CGGGCGTAGTGGCGGGCGTTTGTAGTTTTAGTTATTTGGGAGGTTGAGGTA880150.2369367979470341No Hit
TGGATAATGAATTATAATTAATATTATTAATTAATATTTATTATTAATAAT662850.17843953476020172No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTTTTAGTTG619930.16688545037925906No Hit
TGGTTTTAGTGTTTTGTAATGTTATTGTGTGTATATTTTTTAGATGAAAAT617000.16609669298792257No Hit
TGGAGTAATTTAGGTTGGTTTTTATTTATTTTAAATTTTTTTTTGTATGAA544120.14647736238020814No Hit
CGGGCGCGGTGGCGGGCGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTA506550.13636350053976043No Hit
TGGGTTTATAATATTTGGGGGTAGTTAAAGTGAATTGTATTTGATATTTGG506390.136320428463783No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTTGAGTAGTTGGGATTATAG491980.13244124962106668No Hit
TGGTTGTTAGGTGTTTAATGGGGTTTAGTAGGGTGGGGTTATTTTTGTTAA474410.12771139727779635No Hit
CGGGCGTGGTGGCGGGCGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTA401660.10812706273181359No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)