FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37147037
Sequences flagged as poor quality0
Sequence length51
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA2082570.5606288329268361No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA1547500.4165877348441008No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT1318460.3549300580824252No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA1052400.2833065797414744No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA1012760.2726354729180688No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA919060.24741138842379273No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAACA686090.18469575379592185No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA669760.18029971004147652No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG625020.16825568079629072No Hit
CAAACCCATAACACTTAAAAATAACTAAAATAAACTATATCCAACATCTAA620270.16697697854071106No Hit
CAAACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT552830.1488220985162289No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTCGAAAAACTAAAACA533500.14361845333720694No Hit
CAACTCCAACATCTCACAATACTATCACATACACACCCCCCAAACAAAAAT508290.13683190936601483No Hit
CAAATCCATCATCCACAACCTTAACAATAAACAAAATATTCAAAAAATAAA439380.11828130464349013No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCTAAATAACTAAAACTACAA386620.10407828758993617No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)