FastQCFastQC Report
Tue 13 Sep 2022
EGAF00003471708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24832614
Sequences flagged as poor quality0
Sequence length51
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAATTCACGCCATTCTCCTACCTCAACCTCCCGAATAACTAAAACTACAA874850.3522987954469876No Hit
CAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT853500.34370123096988503No Hit
CAAAATAATAAATTACAATATAAAAAATTATTCCAAAACCTAATAAAATAA791010.318536743654937No Hit
CAAAAAAAAAAACCCCATTCTATACCAACACCTATTCTAATTTTTCAATCA707320.2848350962971518No Hit
CAAATTCACGCCATTCTCCTACCTCAACCTCCCAAATAACTAAAACTACAA653420.2631297695844666No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG516270.20789998185450795No Hit
CAAAATAATCCAAATCAATTTCTATCTACTTCAAATTCCTCCCTATACAAA509850.20531467206795065No Hit
CAAATATCAAAAAAATACCTTAAATAACCTCTAAAACTCAAAAATAAAAAA468590.18869942568269293No Hit
CAAACTCTACCATCTTAACAAACCCTATTCTTAAATAAATATAAATATAAT390550.15727301201556954No Hit
GAAACAATAAACCATAACCAATACTACCAATCAATACTCATCATTAATAAT291180.11725708779591226No Hit
CAACCGCCCCTACTAAAAAATAAAAAACCCCTCTACCCGAGATCGGAAGAG280680.11302877739733724No Hit
CAACTAAAACGATAAAACCCCGTCTCTACTAAAAATACAAAAAATTAACCG268640.1081803148069712No Hit
CAAACGTAATAACGAACGCCTATAATCCCAACTACTTAAAAAACTAAAACA266810.10744338070893382No Hit
CAAAAAACGAAACTTACAATAAACCGAAATTACGCCACTACAATCCGCAAT263450.10609032138138982No Hit
CAAACTACGAACTACAATAACGCAATCTCGACTCACTACAAACTCCGCTTC257570.1037224675581878No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)