FastQCFastQC Report
Mon 5 Sep 2022
EGAF00003471725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003471725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36108102
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTCGAGTAGTTGGGATTATAG1390770.3851684034790862No Hit
TGGAGTAGTAAGTTATAATATGGGAGATTATTTTGAAGTTTGGTAGGATAA1349570.37375822190820224No Hit
TGGATGTTAGAGGGGTGTTTTGGGTAATTTTTGGGATTTAGAAGTGAAAGG1034770.2865755724297001No Hit
CGGGTAGAGGGGTTTTTTATTTTTTAGTAGGGGCGGTTGAGATCGGAAGAG873420.2418903103796483No Hit
CGGTCGTTTTTATTGGGAAGTGAGGAGTTTTTTTGTTTGAGATCGGAAGAG850470.2355343961308185No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTTAAGTAGTTGGGATTATAG844200.23379794374126894No Hit
TGGAGGAGGAGATTTTATTTTATATTAATATTTATTTTGATTTTTTGGTTA816700.22618192448885846No Hit
TGGGTTTTGTTATTTTAATAAATTTTGTTTTTGGGTGGGTGTGGGTATAAT808550.22392481332859865No Hit
CGGGAGGGAGGTGGGGGGGTTAGTTTTTCGTTTGAGATCGGAAGAGCACAC805910.22319367548036725No Hit
CGGGCGTAGTGGCGGGCGTTTGTAGTTTTAGTTATTTGGGAGGTTGAGGTA653250.18091507551407712No Hit
CGGGCGCGGTGGTTTACGTTTGTAATTTTAGTATTTTGGGAGGTCGAGGCG614780.17026095694534152No Hit
CGGTTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTTATCGTTTTAGTTG607630.1682807919397148No Hit
CGGGCGGGGGGTTGATTTTTTTATTTTTTTTTTGAGATCGGAAGAGCACAC583480.16159254230532527No Hit
TGGTTTTAGTGTTTTGTAATGTTATTGTGTGTATATTTTTTAGATGAAAAT526080.14569583302938494No Hit
TGGTTGTTAGGTGTTTAATGGGGTTTAGTAGGGTGGGGTTATTTTTGTTAA466420.12917322544397375No Hit
TGGGTTTATAATATTTGGGGGTAGTTAAAGTGAATTGTATTTGATATTTGG428220.11859388233698909No Hit
CGGGCGCGGTGGCGGGCGTTTGTAGTTTTAGTTATTCGGGAGGTTGAGGTA416600.11537576802015238No Hit
TGGATAATGAATTATAATTAATATTATTAATTAATATTTATTATTAATAAT409880.1135146898610179No Hit
CGGGTTTACGTTATTTTTTTGTTTTAGTTTTTTGAGTAGTTGGGATTATAG400010.11078123131478912No Hit
TGGTGGGGTTGAAGAAGGTGGTGTTGAGGTTGTGGTTTGTTAGTAGTATAG393020.1088453776939037No Hit
CGGGAAGCGGAGTTTGTAGTGAGTCGAGATTGCGTTATTGTAGTTCGTAGT391590.10844934469277837No Hit
CGGATTGCGGATTGTAGTGGCGTAATTTCGGTTTATTGTAAGTTTCGTTTT379850.1051979968373857No Hit
TGGATGTTTAAATTAAATTATTTTTATTGTTATATGATTGAGATCGGAAGA371400.10285780183073594No Hit
CGGTTAAAACGGTGAAATTTCGTTTTTATTAAAAATATAAAAAATTAGTTG361560.10013265166914616No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)